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gillespie algorithm (MathWorks Inc)

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MathWorks Inc gillespie algorithm
Gillespie Algorithm, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gillespie+algorithm/10__1103_slash_physreve__111__054415-183-5-10
Average 90 stars, based on 1 article reviews

gillespie algorithm - by Bioz Stars, 2026-09

90/100 stars

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Article Title: Excitable dynamics through toxin-induced mRNA cleavage in bacteria
Article Snippet: The stochastic simulations were performed using a Gillespie algorithm, based on treating the biochemical reactions as discrete stochastic events [ ], implemented in MATLAB.

Article Title: Anticipating critical transitions in a stochastic macrophage polarization model
Article Snippet: As dynamic and adaptable immune system sentinels, macrophages can adopt various functional phenotypes in response to environmental stimuli.. The transitions between these states, pro-inflammatory (M1), anti-inflammatory (M2), and mixed M1/M2, are crucial for immune regulation and the pathogenesis of many diseases.. Therefore, understanding the parameter domains that enable the coexistence of these phenotypes and the critical values that indicate shifts in macrophage phenotypes is vital.

Software:

Article Title: Noise-reducing optogenetic negative-feedback gene circuits in human cells
Article Snippet: .. A stochastic computational model using the Gillespie algorithm in MATLAB and the Dizzy software package for validation (Supplementary Data) ( ) matched the deterministic model, showing insignificant changes in basal expression for the selected parameters ( ). ..

Biomarker Discovery:

Expressing:

Concentration Assay:

Article Title: Engineering repressors with coevolutionary cues facilitates toggle switches with a master reset
Article Snippet: .. Gillespie algorithm ( ) then was implemented in the MATLAB to solve the equations and simulate the concentration changes of repressors used in MuTMOS system by using parameters estimated from the literature ( ) and experiments. ..